Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
LGG | rs12778891 | chr10:950130 | T/A | 5.04E-5 | 398 | 14.75 | 17.03 | 12.17 | KM Plot |
LGG | rs12809946 | chr12:69712608 | T/G | 0.000179 | 399 | 14.95 | 14.77 | 16.73 | KM Plot |
LGG | rs12885777 | chr14:23323808 | C/T | 2.26E-5 | 395 | 11.43 | 15.43 | 15.93 | KM Plot |
LGG | rs12899987 | chr15:31870453 | A/G | 1.2E-5 | 407 | 15.27 | 15.3 | 15.05 | KM Plot |
LGG | rs12907720 | chr15:31897012 | C/T | 0.000161 | 407 | 13.58 | 15.17 | 15.83 | KM Plot |
LGG | rs12912967 | chr15:31961672 | A/G | 0.000167 | 402 | 15.77 | 15.2 | 11.8 | KM Plot |
LGG | rs13000280 | chr2:84696996 | A/G | 0.000135 | 407 | 9.03 | 15.73 | 15.32 | KM Plot |
LGG | rs13036554 | chr20:44778412 | A/G | 0 | 401 | 15.83 | 13.83 | 1.23 | KM Plot |
LGG | rs13041203 | chr20:44778778 | T/C | 0 | 390 | 15.7 | 14.97 | 1.23 | KM Plot |
LGG | rs13050554 | chr21:45579901 | A/G | 4.64E-6 | 400 | 4.43 | 12.17 | 15.57 | KM Plot |
LGG | rs13054299 | chr22:25182381 | C/T | 2.25E-5 | 388 | 15.02 | 15.3 | 17.2 | KM Plot |
LGG | rs13056159 | chr22:42820207 | G/A | 6.12E-8 | 403 | 15.3 | 16.23 | 4.4 | KM Plot |
LGG | rs13065599 | chr3:187632967 | G/A | 7.92E-5 | 396 | 14.8 | 18.33 | 8.07 | KM Plot |
LGG | rs13075660 | chr3:108772585 | C/T | 0.00013 | 407 | 15.27 | 17.07 | 3.87 | KM Plot |
LGG | rs13087883 | chr3:38871520 | C/T | 1.32E-5 | 402 | 15.15 | 16.47 | 11.63 | KM Plot |